CDS

Accession Number TCMCG057C37378
gbkey CDS
Protein Id XP_018440001.1
Location complement(join(50297568..50297663,50297752..50297850,50298168..50298255,50298446..50298549,50298706..50298783,50298904..50299026,50299121..50299202,50299316..50301009))
Gene LOC108812278
GeneID 108812278
Organism Raphanus sativus

Protein

Length 787aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018584499.1
Definition PREDICTED: nuclear pore complex protein NUP62 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category Y
Description Nsp1-like C-terminal region
KEGG_TC 1.I.1
KEGG_Module M00427        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
KEGG_ko ko:K14306        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03013        [VIEW IN KEGG]
map03013        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000278        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0005102        [VIEW IN EMBL-EBI]
GO:0005198        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005543        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005635        [VIEW IN EMBL-EBI]
GO:0005642        [VIEW IN EMBL-EBI]
GO:0005643        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006351        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006403        [VIEW IN EMBL-EBI]
GO:0006405        [VIEW IN EMBL-EBI]
GO:0006606        [VIEW IN EMBL-EBI]
GO:0006611        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006810        [VIEW IN EMBL-EBI]
GO:0006886        [VIEW IN EMBL-EBI]
GO:0006913        [VIEW IN EMBL-EBI]
GO:0007049        [VIEW IN EMBL-EBI]
GO:0007154        [VIEW IN EMBL-EBI]
GO:0007165        [VIEW IN EMBL-EBI]
GO:0007166        [VIEW IN EMBL-EBI]
GO:0007276        [VIEW IN EMBL-EBI]
GO:0007283        [VIEW IN EMBL-EBI]
GO:0008092        [VIEW IN EMBL-EBI]
GO:0008104        [VIEW IN EMBL-EBI]
GO:0008134        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008219        [VIEW IN EMBL-EBI]
GO:0008285        [VIEW IN EMBL-EBI]
GO:0008289        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009891        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009966        [VIEW IN EMBL-EBI]
GO:0009967        [VIEW IN EMBL-EBI]
GO:0009968        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010557        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010628        [VIEW IN EMBL-EBI]
GO:0010646        [VIEW IN EMBL-EBI]
GO:0010647        [VIEW IN EMBL-EBI]
GO:0010648        [VIEW IN EMBL-EBI]
GO:0010928        [VIEW IN EMBL-EBI]
GO:0010930        [VIEW IN EMBL-EBI]
GO:0010941        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0015031        [VIEW IN EMBL-EBI]
GO:0015833        [VIEW IN EMBL-EBI]
GO:0015931        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0017038        [VIEW IN EMBL-EBI]
GO:0017056        [VIEW IN EMBL-EBI]
GO:0018130        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019438        [VIEW IN EMBL-EBI]
GO:0019894        [VIEW IN EMBL-EBI]
GO:0019904        [VIEW IN EMBL-EBI]
GO:0019953        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0022607        [VIEW IN EMBL-EBI]
GO:0023051        [VIEW IN EMBL-EBI]
GO:0023052        [VIEW IN EMBL-EBI]
GO:0023056        [VIEW IN EMBL-EBI]
GO:0023057        [VIEW IN EMBL-EBI]
GO:0030159        [VIEW IN EMBL-EBI]
GO:0031090        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031328        [VIEW IN EMBL-EBI]
GO:0031503        [VIEW IN EMBL-EBI]
GO:0031965        [VIEW IN EMBL-EBI]
GO:0031967        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031975        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032182        [VIEW IN EMBL-EBI]
GO:0032386        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032504        [VIEW IN EMBL-EBI]
GO:0032774        [VIEW IN EMBL-EBI]
GO:0032879        [VIEW IN EMBL-EBI]
GO:0032880        [VIEW IN EMBL-EBI]
GO:0032947        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033036        [VIEW IN EMBL-EBI]
GO:0033157        [VIEW IN EMBL-EBI]
GO:0033365        [VIEW IN EMBL-EBI]
GO:0034399        [VIEW IN EMBL-EBI]
GO:0034504        [VIEW IN EMBL-EBI]
GO:0034613        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034654        [VIEW IN EMBL-EBI]
GO:0035257        [VIEW IN EMBL-EBI]
GO:0042127        [VIEW IN EMBL-EBI]
GO:0042169        [VIEW IN EMBL-EBI]
GO:0042175        [VIEW IN EMBL-EBI]
GO:0042306        [VIEW IN EMBL-EBI]
GO:0042886        [VIEW IN EMBL-EBI]
GO:0042981        [VIEW IN EMBL-EBI]
GO:0043066        [VIEW IN EMBL-EBI]
GO:0043067        [VIEW IN EMBL-EBI]
GO:0043069        [VIEW IN EMBL-EBI]
GO:0043122        [VIEW IN EMBL-EBI]
GO:0043123        [VIEW IN EMBL-EBI]
GO:0043130        [VIEW IN EMBL-EBI]
GO:0043167        [VIEW IN EMBL-EBI]
GO:0043168        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043933        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044425        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044613        [VIEW IN EMBL-EBI]
GO:0044703        [VIEW IN EMBL-EBI]
GO:0045184        [VIEW IN EMBL-EBI]
GO:0045893        [VIEW IN EMBL-EBI]
GO:0045935        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046822        [VIEW IN EMBL-EBI]
GO:0046907        [VIEW IN EMBL-EBI]
GO:0046966        [VIEW IN EMBL-EBI]
GO:0048232        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0048583        [VIEW IN EMBL-EBI]
GO:0048584        [VIEW IN EMBL-EBI]
GO:0048585        [VIEW IN EMBL-EBI]
GO:0048609        [VIEW IN EMBL-EBI]
GO:0050657        [VIEW IN EMBL-EBI]
GO:0050658        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051049        [VIEW IN EMBL-EBI]
GO:0051168        [VIEW IN EMBL-EBI]
GO:0051169        [VIEW IN EMBL-EBI]
GO:0051170        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051223        [VIEW IN EMBL-EBI]
GO:0051234        [VIEW IN EMBL-EBI]
GO:0051236        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051254        [VIEW IN EMBL-EBI]
GO:0051259        [VIEW IN EMBL-EBI]
GO:0051291        [VIEW IN EMBL-EBI]
GO:0051427        [VIEW IN EMBL-EBI]
GO:0051641        [VIEW IN EMBL-EBI]
GO:0051649        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0060341        [VIEW IN EMBL-EBI]
GO:0060548        [VIEW IN EMBL-EBI]
GO:0065003        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070201        [VIEW IN EMBL-EBI]
GO:0070206        [VIEW IN EMBL-EBI]
GO:0070208        [VIEW IN EMBL-EBI]
GO:0070727        [VIEW IN EMBL-EBI]
GO:0071166        [VIEW IN EMBL-EBI]
GO:0071426        [VIEW IN EMBL-EBI]
GO:0071702        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071705        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0072594        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090087        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097659        [VIEW IN EMBL-EBI]
GO:0098589        [VIEW IN EMBL-EBI]
GO:0098805        [VIEW IN EMBL-EBI]
GO:1900180        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1902531        [VIEW IN EMBL-EBI]
GO:1902533        [VIEW IN EMBL-EBI]
GO:1902680        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903508        [VIEW IN EMBL-EBI]
GO:1903827        [VIEW IN EMBL-EBI]
GO:1904589        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCTGGGTTTTCGTTTGGTCAATCGAACACCGGTGGAGGAGGATCCTTGTTCGGATCTTCCTCCGTAGCAAGCTCCTCGTCTGCTTCATCCACCTCATCTCCGTTAGCTTTCTCCTTCAATCAATCCACCGGATTTGGATTCGGAGCCAACGCATCGGCTCCCGCTTCCTCAACGACTCCATCGTTCGGATTTGGAGCCTCCGCATCGGCTCCTACTTCCTCCGCGACTCCATCGTTCGGATTTGGAGCCTCCGCATCGGCTCCTGCTTCCTCCGCAACTCCATCGTTTGGATTTGGAGCCAGCGCACCGGCTCCTACTTCCTCCGCAGCTCCATCGTTTGGATTTGGAGCTTCCGCCACTGCATCGGGTCCTGCTGCATCCACAACTCCATCGTTTGGATTCGGAGCCACCGCGCCCACGGCATCGACTCCTGCTTCCTCCGCAGCTCCGTCATTTGGATTCGGAGCCCCCGCATCCACCGGATTCGGGTTCGGATCCTCTGCTGCGTCTTCGTCTGGTTCTGCTCCCTCACTGTTTGGATCCTCTACCAATGCTTCCGCGGCTTCTCCTGGCTCTTCTCCTTTCGGATTCGTAACTTCATCGGCTTCTCAGCCTGGTGCTTCTTCTTCTGCGACTGTTTCAGCACCATCTCCGTTCGGAGCGCCAGCGCCAGCCAGTGGTTCAACATCCCTCTTTGGATCTTCCTCGTCTTTATTCTCCGCTCCTTCCTCTGCGGCCAGCTCGAGTTCTCCTTTCTTCGGGACTTCCTCATCTGCCCCTGGCTCAACCGCTTCTCTCTTCGGCGCACAATCTTCAGGCACCACCTCCACACCTTCCCCGTTCGGTGCTGCGGCTCCGTCCTCATCAGCCTCTGCCTCCTCACCGTCAATCTTTGGCGGGGCGGCTGCGTCATCAGCCTCTGGCTCCTCTCCTTCAATCTTTGGCGGGGCGGCTGCGTCCTCAGCCTCTGGCTCCTCACCGTCAATCTTTGGTGCGGCTGCGTCCTCAGCTTCTGCTTCCTCACCATCCATCTTTGGAGCCACCGGTTCATCTCAGTCCATCTTCGGTTCATCTACTACGTCAGCCAGCTCAACACCGTCTCTCTTCTCATCGTCCTTGTCAGGCGCAGCAGCAGCTTCTTCACCATCCCCATTTGGATTTTCCACCGTTTCTTCCTCCTCCACAACAACCAATCCCTCTCCCGCCTCGGGTTCTACCGGACTCTCTTTCTTGAAAAGCACAGGAATCTCAACCACCACTGCTACCTCCGCTTCTGCTCCTTCACAATCATCATCTTCCTCCTTCTCATTTGCTACACCCGCAAGTTCAGGCTTTCAATCTTCTACGGGGTTTAACCTTTCAACCGCAAGCTCAGCTCCTCCATCCACCACATCCCCAGCACTGTTCTCTACTGCAACCACCACCACCACCACCACCACCACCACGTCCTTTTCGACTCCCGCTGCGACTAGTGCACCATCTTCCTCAGCTGCAGCTTCTACAACGACGTTCCCTTCTTTTGGTGTGGGCTCATCTGCAGCCAACACTACTACGGCTACTTCCCCTGCTCCAGCATTTGGTTTTACCACCTCTACTTCTGCTGCTGCAACTACTACTTTTGCTGTACCCCAGGCAGCATCAACTACTGCTACTACGACGCAGACATCACTTGTTGTGGCTTCGACTAGTGGGACAAGCACAACAACTGTTGCAGCTCCACTGGCTGGTGCTCCCAAATTGCCATCTGAAATAACTGGCAAAACTGTTGAGGAGATTATCAAGGAGTGGAATACTGAGCTAGAAGAGCGTACAGGGAGATTCCGGAAACAGGCAAATGCAATTGCTGAATGGGATAAGCGGATCCTGCAGAACCGTGATGTTCTTTTGAGGCTTGAGATTGAAGTTGCAAAAGTGGTTGAAACACAGTCTAGTTTGGAAAGACAGCTGGAATTAATTGACACTCATCAACAAGAGGTTGACAAAGCTTTGAAAAGCATGGAGGAGGAGGCTGAGCGTATATATAATGACGAGCGCAAATCGCTTCTTGACGATGAAGCAGCATCAACAAGAGATGCGATGTATGAACAGTCTGAGCTTGTGGAAAGAGAACTGGAGCATATGACTGAACAAATCAGATCGATAATTCAATCCGTAAATGCAAACCAGGGTGGAGAACTAGAAGCAGTTGATGGGATGAATCCATTGGATGTAGTAGTGAGGATCTTGAACAATCAACTCAGTTCCTTGATGTGGATTGATGAGAAAGCAGAGGAGTTCTCATCTCGGATTCAAAAGATCGCATCTCAGGGCTCTGGTGGAGACCGTGAACTGATGATGGCTCCAAAGCACTGGATGTCGTGA
Protein:  
MSGFSFGQSNTGGGGSLFGSSSVASSSSASSTSSPLAFSFNQSTGFGFGANASAPASSTTPSFGFGASASAPTSSATPSFGFGASASAPASSATPSFGFGASAPAPTSSAAPSFGFGASATASGPAASTTPSFGFGATAPTASTPASSAAPSFGFGAPASTGFGFGSSAASSSGSAPSLFGSSTNASAASPGSSPFGFVTSSASQPGASSSATVSAPSPFGAPAPASGSTSLFGSSSSLFSAPSSAASSSSPFFGTSSSAPGSTASLFGAQSSGTTSTPSPFGAAAPSSSASASSPSIFGGAAASSASGSSPSIFGGAAASSASGSSPSIFGAAASSASASSPSIFGATGSSQSIFGSSTTSASSTPSLFSSSLSGAAAASSPSPFGFSTVSSSSTTTNPSPASGSTGLSFLKSTGISTTTATSASAPSQSSSSSFSFATPASSGFQSSTGFNLSTASSAPPSTTSPALFSTATTTTTTTTTTSFSTPAATSAPSSSAAASTTTFPSFGVGSSAANTTTATSPAPAFGFTTSTSAAATTTFAVPQAASTTATTTQTSLVVASTSGTSTTTVAAPLAGAPKLPSEITGKTVEEIIKEWNTELEERTGRFRKQANAIAEWDKRILQNRDVLLRLEIEVAKVVETQSSLERQLELIDTHQQEVDKALKSMEEEAERIYNDERKSLLDDEAASTRDAMYEQSELVERELEHMTEQIRSIIQSVNANQGGELEAVDGMNPLDVVVRILNNQLSSLMWIDEKAEEFSSRIQKIASQGSGGDRELMMAPKHWMS